Package index • fiphde

All functions

clin_nowcast(): Nowcast clinical laboratory percent positive flu data

density_probs(): Calculate categorical probability density

.mcga(): Make clean column names

fiphde_launcher(): FIPHDE explorer app launcher

forecast_categorical(): Forecast categorical targets

forecast_ili(): Forecast ILI

format_for_submission(): Format forecasts for submission

get_cdc_clin(): Retrieve clinical laboratory percent positive flu data

get_cdc_hosp(): Retrieve hospitalization data from FluSurv-NET

get_cdc_ili(): Retrieve ILI data from ILINet

get_hdgov_hosp(): Retrieve hospitalization data from HHS

get_nhsn_weekly(): Retrieve weekly NHSN flu hospitalization data

get_nowcast_ili(): Retrieve ILI nowcast

get_respnet(): Retrieve data from RESP-NET

glm_fit(): Fit glm models

glm_forecast(): Forecast glm models

glm_quibble(): Get quantiles from prediction intervals

glm_wrap(): Run glm modeling and forecasting

hospitalizations(): Laboratory-confirmed influenza hospitalizations

hubverse_format(): Hubverse formatting

ilinet(): Retrieve ILINet surveillance data

is_monday(): Check Monday

make_tsibble(): Make tsibble

mmwr_week_to_date(): Convert MMWR format to date

mnz(): Minimum non-zero

mnz_replace(): Minimum non-zero replacement

ns_impute(): Non-seasonal flu hospitalization imputation

plot_forecast(): Plot forecasts

plot_forecast_categorical(): Plot categorical forecasts

pois_forc(): Simple Poisson count forecaster

prep_hdgov_hosp(): Prep hospitalization data

prep_nhsn_weekly(): Prepare NHSN weekly data

replace_ili_nowcast(): Replace ILINet data with nowcast

round_preserve(): Round and preserve vector

smoothie(): Calculate smoothed and weighted averages of previous observations

this_monday(): Get Monday

this_saturday(): Get Saturday

to_num(): Clean numeric values

ts_fit_forecast(): Fit and forecast with time-series approaches

ts_format_for_submission(): Format time series forecast

validate_forecast(): Validate forecast submission

who_nrevss(): WHO/NREVSS clinical lab surveillance data